PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0098s0133.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-YC
Protein Properties Length: 257aa    MW: 28527.6 Da    PI: 6.0197
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0098s0133.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC174.31.3e-54761791101
                NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 
                          ql++fw++q   iek+tdfknh+lPlarikki+kadedv+misaeaP+++++ace+fileltlr+w+h+eenkrrtl+k+diaaav+rtd
  Kaladp0098s0133.1.p  76 QLQAFWSNQkleIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPIIFARACEMFILELTLRAWNHTEENKRRTLQKNDIAAAVNRTD 165
                          89******9999****************************************************************************** PP

                NF-YC  88 ifdflvdivprdel 101
                          ifdflvdi p+++l
  Kaladp0098s0133.1.p 166 IFDFLVDILPKEDL 179
                          ***********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471138.23E-3367170IPR009072Histone-fold
PfamPF008083.5E-2298161IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.8E-3799176IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDQQSLGQSH MTASGVAAAP VAYVTPPYQH NQLTGPANPG PIFAPAPVYS QAAGQLAPHI  60
AFQQINQQQQ QQLQQQLQAF WSNQKLEIEK VTDFKNHSLP LARIKKIMKA DEDVRMISAE  120
APIIFARACE MFILELTLRA WNHTEENKRR TLQKNDIAAA VNRTDIFDFL VDILPKEDLK  180
DEALASIPRG PLPAGGPDML PPYHYMPPQN MPHLGAPGMI MGEPVMDPSL YAHQPHPYMA  240
PQMWPQAPQQ DQSSSE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C8e-40611763119HapE
4g92_C8e-40611763119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148154RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302444.11e-115PREDICTED: nuclear transcription factor Y subunit C-9
SwissprotQ8L4B21e-81NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLM5W0Q01e-111M5W0Q0_PRUPE; Uncharacterized protein
STRINGVIT_14s0128g00250.t011e-109(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.42e-77nuclear factor Y, subunit C9